J5_9DFE_014

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

9DFE|1|2A|A|652|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DFE|1|2A|C|601
9DFE|1|2A|G|602
9DFE|1|2A|A|603
9DFE|1|2A|G|604
*
9DFE|1|2A|C|624
9DFE|1|2A|G|625
9DFE|1|2A|U|626
9DFE|1|2A|A|627
9DFE|1|2A|G|628
*
9DFE|1|2A|C|635
9DFE|1|2A|G|636
9DFE|1|2A|A|637
9DFE|1|2A|G|638
*
9DFE|1|2A|C|650
9DFE|1|2A|G|651
9DFE|1|2A|C|652
9DFE|1|2A|A|652|||A
9DFE|1|2A|A|652|||B
9DFE|1|2A|G|652|||C
*
9DFE|1|2A|C|652|||V
9DFE|1|2A|A|653
9DFE|1|2A|A|654
9DFE|1|2A|A|655
9DFE|1|2A|G|656

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15