J5_9DFE_016
3D structure
- PDB id
- 9DFE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- AAAAGACC*GGAUAACA*UCG(2MA)UGUC*GGUUCAG*CGGUCU
- Length
- 37 nucleotides
- Bulged bases
- 9DFE|1|2A|A|2062, 9DFE|1|2A|A|2448, 9DFE|1|2A|U|2449, 9DFE|1|2A|U|2506, 9DFE|1|2A|U|2585, 9DFE|1|2A|U|2609
- QA status
- Modified nucleotides: 2MA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9DFE|1|2A|A|2057
9DFE|1|2A|A|2058
9DFE|1|2A|A|2059
9DFE|1|2A|A|2060
9DFE|1|2A|G|2061
9DFE|1|2A|A|2062
9DFE|1|2A|C|2063
9DFE|1|2A|C|2064
*
9DFE|1|2A|G|2446
9DFE|1|2A|G|2447
9DFE|1|2A|A|2448
9DFE|1|2A|U|2449
9DFE|1|2A|A|2450
9DFE|1|2A|A|2451
9DFE|1|2A|C|2452
9DFE|1|2A|A|2453
*
9DFE|1|2A|U|2500
9DFE|1|2A|C|2501
9DFE|1|2A|G|2502
9DFE|1|2A|2MA|2503
9DFE|1|2A|U|2504
9DFE|1|2A|G|2505
9DFE|1|2A|U|2506
9DFE|1|2A|C|2507
*
9DFE|1|2A|G|2582
9DFE|1|2A|G|2583
9DFE|1|2A|U|2584
9DFE|1|2A|U|2585
9DFE|1|2A|C|2586
9DFE|1|2A|A|2587
9DFE|1|2A|G|2588
*
9DFE|1|2A|C|2606
9DFE|1|2A|G|2607
9DFE|1|2A|G|2608
9DFE|1|2A|U|2609
9DFE|1|2A|C|2610
9DFE|1|2A|U|2611
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 25
- 50S ribosomal protein L32
- Chain 2D
- 50S ribosomal protein L2
- Chain 2E
- 50S ribosomal protein L3
- Chain 2F
- 50S ribosomal protein L4
- Chain 2P
- 50S ribosomal protein L15
- Chain 2Q
- 50S ribosomal protein L16
- Chain 2W
- 50S ribosomal protein L22
Coloring options: