J5_9DOV_011
3D structure
- PDB id
- 9DOV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- ACUUUG*UUUCCUUC*GGACUUU*AUAGAAUAGGACGUUU*AUCGUAAUGAU
- Length
- 48 nucleotides
- Bulged bases
- 9DOV|1|B5|U|639, 9DOV|1|B5|U|694, 9DOV|1|B5|C|696, 9DOV|1|B5|C|697, 9DOV|1|B5|A|740, 9DOV|1|B5|U|742, 9DOV|1|B5|U|813, 9DOV|1|B5|G|815, 9DOV|1|B5|A|856
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9DOV|1|B5|A|636
9DOV|1|B5|C|637
9DOV|1|B5|U|638
9DOV|1|B5|U|639
9DOV|1|B5|U|640
9DOV|1|B5|G|641
*
9DOV|1|B5|U|693
9DOV|1|B5|U|694
9DOV|1|B5|U|695
9DOV|1|B5|C|696
9DOV|1|B5|C|697
9DOV|1|B5|U|698
9DOV|1|B5|U|699
9DOV|1|B5|C|700
*
9DOV|1|B5|G|738
9DOV|1|B5|G|739
9DOV|1|B5|A|740
9DOV|1|B5|C|741
9DOV|1|B5|U|742
9DOV|1|B5|U|743
9DOV|1|B5|U|744
*
9DOV|1|B5|A|807
9DOV|1|B5|U|808
9DOV|1|B5|A|809
9DOV|1|B5|G|810
9DOV|1|B5|A|811
9DOV|1|B5|A|812
9DOV|1|B5|U|813
9DOV|1|B5|A|814
9DOV|1|B5|G|815
9DOV|1|B5|G|816
9DOV|1|B5|A|817
9DOV|1|B5|C|818
9DOV|1|B5|G|819
9DOV|1|B5|U|820
9DOV|1|B5|U|821
9DOV|1|B5|U|822
*
9DOV|1|B5|A|850
9DOV|1|B5|U|851
9DOV|1|B5|C|852
9DOV|1|B5|G|853
9DOV|1|B5|U|854
9DOV|1|B5|A|855
9DOV|1|B5|A|856
9DOV|1|B5|U|857
9DOV|1|B5|G|858
9DOV|1|B5|A|859
9DOV|1|B5|U|860
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain AR
- 60S ribosomal protein L19-A
- Chain BE
- 40S ribosomal protein S4-A
- Chain BH
- 40S ribosomal protein S7-A
- Chain BL
- 40S ribosomal protein S11-A
- Chain BN
- 40S ribosomal protein S13
- Chain BW
- Small ribosomal subunit protein uS8A
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