J5_9DP7_001
3D structure
- PDB id
- 9DP7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 9DP7|1|A4|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9DP7|1|A1|A|20
9DP7|1|A1|G|21
9DP7|1|A1|G|22
*
9DP7|1|A4|C|35
9DP7|1|A4|G|36
9DP7|1|A4|A|37
9DP7|1|A4|U|38
9DP7|1|A4|G|39
9DP7|1|A4|A|40
9DP7|1|A4|A|41
9DP7|1|A4|G|42
*
9DP7|1|A4|U|102
9DP7|1|A4|G|103
9DP7|1|A4|A|104
9DP7|1|A4|A|105
9DP7|1|A4|C|106
9DP7|1|A4|G|107
*
9DP7|1|A4|C|115
9DP7|1|A4|G|116
*
9DP7|1|A4|C|137
9DP7|1|A4|A|138
9DP7|1|A4|U|139
Current chains
- Chain A1
- 25S rRNA
- Chain A4
- 5.8S rRNA
Nearby chains
- Chain AN
- 60S ribosomal protein L15-A
- Chain AX
- 60S ribosomal protein L25
- Chain Ah
- 60S ribosomal protein L35-A
- Chain Aj
- 60S ribosomal protein L37-A
- Chain Al
- 60S ribosomal protein L39
Coloring options: