J5_9DP7_004
3D structure
- PDB id
- 9DP7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 9DP7|1|A1|G|2116, 9DP7|1|A1|G|2121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9DP7|1|A1|G|1906
9DP7|1|A1|C|1907
9DP7|1|A1|A|1908
9DP7|1|A1|A|1909
9DP7|1|A1|A|1910
9DP7|1|A1|A|1911
9DP7|1|A1|U|1912
9DP7|1|A1|A|1913
9DP7|1|A1|G|1914
*
9DP7|1|A1|U|1938
9DP7|1|A1|G|1939
*
9DP7|1|A1|U|2109
9DP7|1|A1|G|2110
*
9DP7|1|A1|C|2114
9DP7|1|A1|G|2115
9DP7|1|A1|G|2116
9DP7|1|A1|A|2117
9DP7|1|A1|C|2118
9DP7|1|A1|A|2119
9DP7|1|A1|A|2120
9DP7|1|A1|G|2121
9DP7|1|A1|G|2122
*
9DP7|1|A1|C|2331
9DP7|1|A1|A|2332
9DP7|1|A1|C|2333
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AB
- 60S ribosomal protein L3
- Chain AR
- 60S ribosomal protein L19-A
- Chain AV
- 60S ribosomal protein L23-A
- Chain AW
- Large ribosomal subunit protein eL24A
- Chain B5
- Small subunit ribosomal RNA; SSU rRNA
- Chain BI
- 40S ribosomal protein S8-A
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