J5_9E0N_008

3D structure

PDB id

9E0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis unmethylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

UUCA*UUUA*UG*CG*CGGAUAAAA

Length

21 nucleotides

Bulged bases

9E0N|1|A|C|2299, 9E0N|1|A|G|2652, 9E0N|1|A|G|2653, 9E0N|1|A|A|2654, 9E0N|1|A|U|2655, 9E0N|1|A|A|2658

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9E0N|1|A|U|2297
9E0N|1|A|U|2298
9E0N|1|A|C|2299
9E0N|1|A|A|2300
*
9E0N|1|A|U|2467
9E0N|1|A|U|2468
9E0N|1|A|U|2469
9E0N|1|A|A|2470
*
9E0N|1|A|U|2482
9E0N|1|A|G|2483
*
9E0N|1|A|C|2505
9E0N|1|A|G|2506
*
9E0N|1|A|C|2651
9E0N|1|A|G|2652
9E0N|1|A|G|2653
9E0N|1|A|A|2654
9E0N|1|A|U|2655
9E0N|1|A|A|2656
9E0N|1|A|A|2657
9E0N|1|A|A|2658
9E0N|1|A|A|2659

Current chains

Chain A

23S rRNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL35

Chain C

Large ribosomal subunit protein uL2

Chain M

Large ribosomal subunit protein uL15

Chain X

Large ribosomal subunit protein bL27

Chain Y

Large ribosomal subunit protein bL28