J5_9E16_002

3D structure

PDB id

9E16 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying an E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUAAAC*GGGUUGUG*CGAGUAG*UGAAUCCG*UAAG

Length

33 nucleotides

Bulged bases

9E16|1|I|U|319, 9E16|1|I|C|494

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9E16|1|I|C|270
9E16|1|I|U|271
9E16|1|I|A|272
9E16|1|I|A|273
9E16|1|I|A|274
9E16|1|I|C|275
*
9E16|1|I|G|313
9E16|1|I|G|314
9E16|1|I|G|315
9E16|1|I|U|316
9E16|1|I|U|317
9E16|1|I|G|318
9E16|1|I|U|319
9E16|1|I|G|320
*
9E16|1|I|C|458
9E16|1|I|G|459
9E16|1|I|A|460
9E16|1|I|G|461
9E16|1|I|U|462
9E16|1|I|A|463
9E16|1|I|G|464
*
9E16|1|I|U|488
9E16|1|I|G|489
9E16|1|I|A|490
9E16|1|I|A|491
9E16|1|I|U|492
9E16|1|I|C|493
9E16|1|I|C|494
9E16|1|I|G|495
*
9E16|1|I|U|510
9E16|1|I|A|511
9E16|1|I|A|512
9E16|1|I|G|513

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain y

50S ribosomal protein L28 C-