J5_9E16_011
3D structure
- PDB id
- 9E16 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying an E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CAAG*CGAACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 9E16|1|a|A|104, 9E16|1|a|C|351
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9E16_011 not in the Motif Atlas
- Homologous match to J5_8B0X_003
- Geometric discrepancy: 0.1457
- The information below is about J5_8B0X_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.3
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9E16|1|a|C|61
9E16|1|a|A|62
9E16|1|a|A|63
9E16|1|a|G|64
*
9E16|1|a|C|101
9E16|1|a|G|102
9E16|1|a|A|103
9E16|1|a|A|104
9E16|1|a|C|105
9E16|1|a|G|106
9E16|1|a|G|107
9E16|1|a|G|108
*
9E16|1|a|C|313
9E16|1|a|A|314
9E16|1|a|C|315
*
9E16|1|a|G|336
9E16|1|a|A|337
9E16|1|a|C|338
*
9E16|1|a|G|349
9E16|1|a|G|350
9E16|1|a|C|351
9E16|1|a|A|352
9E16|1|a|G|353
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain K
- Large ribosomal subunit protein uL14
- Chain P
- 50S ribosomal protein L19
- Chain p
- 30S ribosomal protein S16
- Chain t
- 30S ribosomal protein S20
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