J5_9E1S_005

3D structure

PDB id

9E1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

CAAGG*CCGCAGC*GCGAG*CGACCCA*UGAAUAG

Length

31 nucleotides

Bulged bases

9E1S|1|I|C|758, 9E1S|1|I|C|759, 9E1S|1|I|G|780, 9E1S|1|I|A|781

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9E1S|1|I|C|704
9E1S|1|I|A|705
9E1S|1|I|A|706
9E1S|1|I|G|707
9E1S|1|I|G|708
*
9E1S|1|I|C|727
9E1S|1|I|C|728
9E1S|1|I|G|729
9E1S|1|I|C|730
9E1S|1|I|A|731
9E1S|1|I|G|732
9E1S|1|I|C|733
*
9E1S|1|I|G|738
9E1S|1|I|C|739
9E1S|1|I|G|740
9E1S|1|I|A|741
9E1S|1|I|G|742
*
9E1S|1|I|C|754
9E1S|1|I|G|755
9E1S|1|I|A|756
9E1S|1|I|C|757
9E1S|1|I|C|758
9E1S|1|I|C|759
9E1S|1|I|A|760
*
9E1S|1|I|U|779
9E1S|1|I|G|780
9E1S|1|I|A|781
9E1S|1|I|A|782
9E1S|1|I|U|783
9E1S|1|I|A|784
9E1S|1|I|G|785

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15