J5_9E6Q_007
3D structure
- PDB id
- 9E6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- UUCA*UUCG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 9E6Q|1|1|C|2196, 9E6Q|1|1|A|2544, 9E6Q|1|1|G|2545, 9E6Q|1|1|A|2546, 9E6Q|1|1|A|2547
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9E6Q_007 not in the Motif Atlas
- Homologous match to J5_4V9F_008
- Geometric discrepancy: 0.175
- The information below is about J5_4V9F_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08912.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
9E6Q|1|1|U|2194
9E6Q|1|1|U|2195
9E6Q|1|1|C|2196
9E6Q|1|1|A|2197
*
9E6Q|1|1|U|2354
9E6Q|1|1|U|2355
9E6Q|1|1|C|2356
9E6Q|1|1|G|2357
*
9E6Q|1|1|C|2370
9E6Q|1|1|A|2371
*
9E6Q|1|1|U|2393
9E6Q|1|1|G|2394
*
9E6Q|1|1|C|2543
9E6Q|1|1|A|2544
9E6Q|1|1|G|2545
9E6Q|1|1|A|2546
9E6Q|1|1|A|2547
9E6Q|1|1|A|2548
9E6Q|1|1|A|2549
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 3
- Putative signal-transduction protein with CBS domains
- Chain AA
- Large ribosomal subunit protein uL2
- Chain AL
- Large ribosomal subunit protein uL15
- Chain AM
- 50S ribosomal protein L15e
- Chain AS
- Large ribosomal subunit protein eL21
- Chain Ah
- eL42
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