J5_9EBB_001

3D structure

PDB id

9EBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAC*GAG

Length

22 nucleotides

Bulged bases

9EBB|1|I|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9EBB_001 not in the Motif Atlas

Homologous match to J5_8B0X_004

Geometric discrepancy: 0.0817

The information below is about J5_8B0X_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.3

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9EBB|1|I|C|47
9EBB|1|I|G|48
9EBB|1|I|A|49
9EBB|1|I|U|50
9EBB|1|I|G|51
9EBB|1|I|A|52
9EBB|1|I|A|53
9EBB|1|I|G|54
*
9EBB|1|I|C|116
9EBB|1|I|G|117
9EBB|1|I|A|118
9EBB|1|I|A|119
9EBB|1|I|U|120
9EBB|1|I|G|121
*
9EBB|1|I|C|130
9EBB|1|I|A|131
*
9EBB|1|I|U|150
9EBB|1|I|A|151
9EBB|1|I|C|152
*
9EBB|1|I|G|178
9EBB|1|I|A|179
9EBB|1|I|G|180

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein bL34

Chain T

50S ribosomal protein L23