J5_9EC3_001

3D structure

PDB id

9EC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAC*GAG

Length

22 nucleotides

Bulged bases

9EC3|1|I|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9EC3_001 not in the Motif Atlas

Homologous match to J5_8B0X_004

Geometric discrepancy: 0.1008

The information below is about J5_8B0X_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.3

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9EC3|1|I|C|47
9EC3|1|I|G|48
9EC3|1|I|A|49
9EC3|1|I|U|50
9EC3|1|I|G|51
9EC3|1|I|A|52
9EC3|1|I|A|53
9EC3|1|I|G|54
*
9EC3|1|I|C|116
9EC3|1|I|G|117
9EC3|1|I|A|118
9EC3|1|I|A|119
9EC3|1|I|U|120
9EC3|1|I|G|121
*
9EC3|1|I|C|130
9EC3|1|I|A|131
*
9EC3|1|I|U|150
9EC3|1|I|A|151
9EC3|1|I|C|152
*
9EC3|1|I|G|178
9EC3|1|I|A|179
9EC3|1|I|G|180

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein bL34

Chain T

50S ribosomal protein L23