J5_9ED0_002

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGG(A2M)UCCAU*AUA(OMG)

Length

35 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9ED0|1|2|C|30
9ED0|1|2|U|31
9ED0|1|2|U|32
9ED0|1|2|G|33
9ED0|1|2|U|34
*
9ED0|1|2|A|521
9ED0|1|2|A|522
9ED0|1|2|A|523
9ED0|1|2|U|524
9ED0|1|2|A|525
9ED0|1|2|A|526
9ED0|1|2|C|527
*
9ED0|1|2|G|558
9ED0|1|2|G|559
9ED0|1|2|A|560
9ED0|1|2|A|561
9ED0|1|2|U|562
9ED0|1|2|G|563
9ED0|1|2|A|564
9ED0|1|2|G|565
*
9ED0|1|2|C|585
9ED0|1|2|G|586
9ED0|1|2|A|587
9ED0|1|2|G|588
9ED0|1|2|G|589
9ED0|1|2|A2M|590
9ED0|1|2|U|591
9ED0|1|2|C|592
9ED0|1|2|C|593
9ED0|1|2|A|594
9ED0|1|2|U|595
*
9ED0|1|2|A|641
9ED0|1|2|U|642
9ED0|1|2|A|643
9ED0|1|2|OMG|644

Current chains

Chain 2

rRNA

Nearby chains

Chain J

Small ribosomal subunit protein uS4

Chain X

40S ribosomal protein S23

Chain e

Small ribosomal subunit protein eS30