J5_9ED0_004

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

9ED0|1|2|G|126, 9ED0|1|2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9ED0|1|2|G|123
9ED0|1|2|U|124
9ED0|1|2|C|125
9ED0|1|2|G|126
9ED0|1|2|C|127
9ED0|1|2|U|128
9ED0|1|2|C|129
*
9ED0|1|2|G|183
9ED0|1|2|G|184
9ED0|1|2|G|185
*
9ED0|1|2|U|214
9ED0|1|2|G|215
*
9ED0|1|2|C|310
9ED0|1|2|C|311
9ED0|1|2|G|312
*
9ED0|1|2|C|337
9ED0|1|2|G|338
9ED0|1|2|A|339
9ED0|1|2|C|340
9ED0|1|2|C|341

Current chains

Chain 2

rRNA

Nearby chains

Chain E

Small ribosomal subunit protein eS4, X isoform

Chain G

Small ribosomal subunit protein eS6

Chain I

Small ribosomal subunit protein eS8