J5_9EHO_001
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAG*CGAUGAAG*CGAACG*CG*CCC
- Length
- 22 nucleotides
- Bulged bases
- 9EHO|1|8|U|37
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9EHO|1|5|G|19
9EHO|1|5|A|20
9EHO|1|5|G|21
*
9EHO|1|8|C|34
9EHO|1|8|G|35
9EHO|1|8|A|36
9EHO|1|8|U|37
9EHO|1|8|G|38
9EHO|1|8|A|39
9EHO|1|8|A|40
9EHO|1|8|G|41
*
9EHO|1|8|C|100
9EHO|1|8|G|101
9EHO|1|8|A|102
9EHO|1|8|A|103
9EHO|1|8|C|104
9EHO|1|8|G|105
*
9EHO|1|8|C|113
9EHO|1|8|G|114
*
9EHO|1|8|C|141
9EHO|1|8|C|142
9EHO|1|8|C|143
Current chains
- Chain 5
- 28S rRNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain N
- Ribosomal protein L15
- Chain X
- Large ribosomal subunit protein uL23 N-terminal domain-containing protein
- Chain h
- 60S ribosomal protein L35
- Chain j
- Ribosomal protein L37
- Chain l
- Large ribosomal subunit protein eL39
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