J5_9EHO_008
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 9EHO|1|AA|A|56, 9EHO|1|AA|A|95, 9EHO|1|AA|C|717
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9EHO|1|AA|C|54
9EHO|1|AA|A|55
9EHO|1|AA|A|56
9EHO|1|AA|G|57
*
9EHO|1|AA|C|92
9EHO|1|AA|G|93
9EHO|1|AA|A|94
9EHO|1|AA|A|95
9EHO|1|AA|U|96
9EHO|1|AA|G|97
9EHO|1|AA|G|98
9EHO|1|AA|C|99
*
9EHO|1|AA|G|679
9EHO|1|AA|A|680
9EHO|1|AA|G|681
*
9EHO|1|AA|C|702
9EHO|1|AA|A|703
9EHO|1|AA|C|704
*
9EHO|1|AA|G|715
9EHO|1|AA|G|716
9EHO|1|AA|C|717
9EHO|1|AA|A|718
9EHO|1|AA|G|719
Current chains
- Chain AA
- 18S rRNA
Nearby chains
- Chain FF
- 40S ribosomal protein S4
- Chain HH
- Small ribosomal subunit protein eS6
- Chain JJ
- 40S ribosomal protein S8
- Chain KK
- Small ribosomal subunit protein uS4
- Chain V
- Large ribosomal subunit protein uL14
- Chain ZZ
- 40S ribosomal protein S24
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