J5_9EHO_008

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAG*CGAAUGGC*GAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

9EHO|1|AA|A|56, 9EHO|1|AA|A|95, 9EHO|1|AA|C|717

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9EHO_008 not in the Motif Atlas

Homologous match to J5_9PN5_009

Geometric discrepancy: 0.0916

The information below is about J5_9PN5_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.3

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

6

Unit IDs

9EHO|1|AA|C|54
9EHO|1|AA|A|55
9EHO|1|AA|A|56
9EHO|1|AA|G|57
*
9EHO|1|AA|C|92
9EHO|1|AA|G|93
9EHO|1|AA|A|94
9EHO|1|AA|A|95
9EHO|1|AA|U|96
9EHO|1|AA|G|97
9EHO|1|AA|G|98
9EHO|1|AA|C|99
*
9EHO|1|AA|G|679
9EHO|1|AA|A|680
9EHO|1|AA|G|681
*
9EHO|1|AA|C|702
9EHO|1|AA|A|703
9EHO|1|AA|C|704
*
9EHO|1|AA|G|715
9EHO|1|AA|G|716
9EHO|1|AA|C|717
9EHO|1|AA|A|718
9EHO|1|AA|G|719

Current chains

Chain AA

18S rRNA

Nearby chains

Chain FF

40S ribosomal protein S4

Chain HH

Small ribosomal subunit protein eS6

Chain JJ

40S ribosomal protein S8

Chain KK

Small ribosomal subunit protein uS4

Chain V

Large ribosomal subunit protein uL14

Chain ZZ

40S ribosomal protein S24