J5_9F58_005

3D structure

PDB id

9F58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gcn2 dimer bound to the 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU

Length

40 nucleotides

Bulged bases

9F58|1|a|A|2404, 9F58|1|a|A|2817, 9F58|1|a|G|2874, 9F58|1|a|U|2875, 9F58|1|a|U|2978, 9F58|1|a|U|2979

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9F58|1|a|A|2399
9F58|1|a|G|2400
9F58|1|a|A|2401
9F58|1|a|A|2402
9F58|1|a|G|2403
9F58|1|a|A|2404
9F58|1|a|C|2405
9F58|1|a|C|2406
*
9F58|1|a|G|2815
9F58|1|a|G|2816
9F58|1|a|A|2817
9F58|1|a|U|2818
9F58|1|a|A|2819
9F58|1|a|A|2820
9F58|1|a|C|2821
9F58|1|a|U|2822
9F58|1|a|G|2823
*
9F58|1|a|C|2867
9F58|1|a|U|2868
9F58|1|a|U|2869
9F58|1|a|C|2870
9F58|1|a|G|2871
9F58|1|a|A|2872
9F58|1|a|U|2873
9F58|1|a|G|2874
9F58|1|a|U|2875
9F58|1|a|C|2876
*
9F58|1|a|G|2951
9F58|1|a|G|2952
9F58|1|a|U|2953
9F58|1|a|U|2954
9F58|1|a|U|2955
9F58|1|a|A|2956
9F58|1|a|G|2957
*
9F58|1|a|U|2975
9F58|1|a|A|2976
9F58|1|a|G|2977
9F58|1|a|U|2978
9F58|1|a|U|2979
9F58|1|a|U|2980

Current chains

Chain a

25S rRNA

Nearby chains

Chain 3

60S ribosomal protein L4-A

Chain M

60S ribosomal protein L29

Chain c

60S ribosomal protein L2-A

Chain d

60S ribosomal protein L3

Chain q

60S ribosomal protein L17-A