J5_9F58_006
3D structure
- PDB id
- 9F58 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Gcn2 dimer bound to the 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 9F58|1|a|G|2418, 9F58|1|a|A|2799, 9F58|1|a|G|2800, 9F58|1|a|A|2801, 9F58|1|a|A|2802, 9F58|1|a|A|2803
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9F58_006 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.0843
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
9F58|1|a|U|2416
9F58|1|a|U|2417
9F58|1|a|G|2418
9F58|1|a|A|2419
*
9F58|1|a|U|2611
9F58|1|a|U|2612
9F58|1|a|U|2613
9F58|1|a|G|2614
*
9F58|1|a|C|2627
9F58|1|a|A|2628
*
9F58|1|a|U|2650
9F58|1|a|G|2651
*
9F58|1|a|C|2798
9F58|1|a|A|2799
9F58|1|a|G|2800
9F58|1|a|A|2801
9F58|1|a|A|2802
9F58|1|a|A|2803
9F58|1|a|A|2804
Current chains
- Chain a
- 25S rRNA
Nearby chains
- Chain I
- eIF-2-alpha kinase GCN2
- Chain L
- 60S ribosomal protein L28
- Chain M
- 60S ribosomal protein L29
- Chain Z
- 60S ribosomal protein L42-A
- Chain c
- 60S ribosomal protein L2-A
- Chain o
- 60S ribosomal protein L15-A
- Chain r
- 60S ribosomal protein L18-A
- Chain u
- 60S ribosomal protein L21-A
Coloring options: