J5_9F9S_006
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 9F9S|1|L1|G|2418, 9F9S|1|L1|A|2799, 9F9S|1|L1|G|2800, 9F9S|1|L1|A|2801, 9F9S|1|L1|A|2802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9F9S_006 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.1992
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
9F9S|1|L1|U|2416
9F9S|1|L1|U|2417
9F9S|1|L1|G|2418
9F9S|1|L1|A|2419
*
9F9S|1|L1|U|2611
9F9S|1|L1|U|2612
9F9S|1|L1|U|2613
9F9S|1|L1|G|2614
*
9F9S|1|L1|C|2627
9F9S|1|L1|A|2628
*
9F9S|1|L1|U|2650
9F9S|1|L1|G|2651
*
9F9S|1|L1|C|2798
9F9S|1|L1|A|2799
9F9S|1|L1|G|2800
9F9S|1|L1|A|2801
9F9S|1|L1|A|2802
9F9S|1|L1|A|2803
9F9S|1|L1|A|2804
Current chains
- Chain L1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)
Nearby chains
- Chain LI
- 60S ribosomal protein L15-A
- Chain LL
- 60S ribosomal protein L18-A
- Chain LO
- 60S ribosomal protein L21-A
- Chain Lc
- 60S ribosomal protein L42-A
- Chain Lp
- 60S ribosomal protein L29
- Chain Lq
- 60S ribosomal protein L28
- Chain Lw
- 60S ribosomal protein L2-A
Coloring options: