J5_9F9S_008
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAGU(OMC)*GGAC*GUUC*GC*GCAGAU(OMC)
- Length
- 23 nucleotides
- Bulged bases
- 9F9S|1|M1|U|1436
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9F9S_008 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0494
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9F9S|1|M1|G|658
9F9S|1|M1|G|659
9F9S|1|M1|A|660
9F9S|1|M1|G|661
9F9S|1|M1|U|662
9F9S|1|M1|OMC|663
*
9F9S|1|M1|G|799
9F9S|1|M1|G|800
9F9S|1|M1|A|801
9F9S|1|M1|C|802
*
9F9S|1|M1|G|941
9F9S|1|M1|U|942
9F9S|1|M1|U|943
9F9S|1|M1|C|944
*
9F9S|1|M1|G|1375
9F9S|1|M1|C|1376
*
9F9S|1|M1|G|1431
9F9S|1|M1|C|1432
9F9S|1|M1|A|1433
9F9S|1|M1|G|1434
9F9S|1|M1|A|1435
9F9S|1|M1|U|1436
9F9S|1|M1|OMC|1437
Current chains
- Chain M1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications
Nearby chains
- Chain M2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain MG
- 60S ribosomal protein L13-A
- Chain MI
- 60S ribosomal protein L15-A
- Chain Mm
- 60S ribosomal protein L32
- Chain Mq
- 60S ribosomal protein L28
- Chain My
- 60S ribosomal protein L4-A
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