J5_9F9S_010
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 9F9S|1|M1|G|2116, 9F9S|1|M1|G|2121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9F9S_010 not in the Motif Atlas
- Homologous match to J5_8P9A_013
- Geometric discrepancy: 0.0577
- The information below is about J5_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
9F9S|1|M1|G|1906
9F9S|1|M1|C|1907
9F9S|1|M1|A|1908
9F9S|1|M1|A|1909
9F9S|1|M1|A|1910
9F9S|1|M1|A|1911
9F9S|1|M1|U|1912
9F9S|1|M1|A|1913
9F9S|1|M1|G|1914
*
9F9S|1|M1|U|1938
9F9S|1|M1|G|1939
*
9F9S|1|M1|U|2109
9F9S|1|M1|G|2110
*
9F9S|1|M1|C|2114
9F9S|1|M1|G|2115
9F9S|1|M1|G|2116
9F9S|1|M1|A|2117
9F9S|1|M1|C|2118
9F9S|1|M1|A|2119
9F9S|1|M1|A|2120
9F9S|1|M1|G|2121
9F9S|1|M1|G|2122
*
9F9S|1|M1|C|2331
9F9S|1|M1|A|2332
9F9S|1|M1|C|2333
Current chains
- Chain M1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications
Nearby chains
- Chain MM
- 60S ribosomal protein L19-A
- Chain Ma
- 60S ribosomal protein L23-A
- Chain Mu
- 60S ribosomal protein L24-A
- Chain Mx
- 60S ribosomal protein L3
- Chain R1
- Small subunit ribosomal RNA; SSU rRNA
- Chain Ri
- 40S ribosomal protein S8-A
Coloring options: