J5_9F9S_011
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGAAGACC*(OMG)GAUAACUG*CUU(5MC)GAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 9F9S|1|M1|A|2404, 9F9S|1|M1|A|2817, 9F9S|1|M1|U|2873, 9F9S|1|M1|G|2874, 9F9S|1|M1|U|2978, 9F9S|1|M1|U|2979
- QA status
- Modified nucleotides: OMG, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9F9S|1|M1|A|2399
9F9S|1|M1|G|2400
9F9S|1|M1|A|2401
9F9S|1|M1|A|2402
9F9S|1|M1|G|2403
9F9S|1|M1|A|2404
9F9S|1|M1|C|2405
9F9S|1|M1|C|2406
*
9F9S|1|M1|OMG|2815
9F9S|1|M1|G|2816
9F9S|1|M1|A|2817
9F9S|1|M1|U|2818
9F9S|1|M1|A|2819
9F9S|1|M1|A|2820
9F9S|1|M1|C|2821
9F9S|1|M1|U|2822
9F9S|1|M1|G|2823
*
9F9S|1|M1|C|2867
9F9S|1|M1|U|2868
9F9S|1|M1|U|2869
9F9S|1|M1|5MC|2870
9F9S|1|M1|G|2871
9F9S|1|M1|A|2872
9F9S|1|M1|U|2873
9F9S|1|M1|G|2874
9F9S|1|M1|U|2875
9F9S|1|M1|C|2876
*
9F9S|1|M1|G|2951
9F9S|1|M1|G|2952
9F9S|1|M1|U|2953
9F9S|1|M1|U|2954
9F9S|1|M1|U|2955
9F9S|1|M1|A|2956
9F9S|1|M1|G|2957
*
9F9S|1|M1|U|2975
9F9S|1|M1|A|2976
9F9S|1|M1|G|2977
9F9S|1|M1|U|2978
9F9S|1|M1|U|2979
9F9S|1|M1|U|2980
Current chains
- Chain M1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications
Nearby chains
- Chain DP
- Transfer RNA; tRNA
- Chain ME
- 60S ribosomal protein L10
- Chain MK
- 60S ribosomal protein L17-A
- Chain Mp
- 60S ribosomal protein L29
- Chain Mq
- 60S ribosomal protein L28
- Chain Mw
- 60S ribosomal protein L2-A
- Chain Mx
- 60S ribosomal protein L3
- Chain My
- 60S ribosomal protein L4-A
Coloring options: