J5_9F9S_016

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGAAU*AUGGUU

Length

44 nucleotides

Bulged bases

9F9S|1|R1|U|132, 9F9S|1|R1|U|134, 9F9S|1|R1|A|135, 9F9S|1|R1|A|140, 9F9S|1|R1|U|141, 9F9S|1|R1|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9F9S|1|R1|A|124
9F9S|1|R1|U|125
9F9S|1|R1|A|126
9F9S|1|R1|G|127
9F9S|1|R1|U|128
9F9S|1|R1|U|129
9F9S|1|R1|C|130
9F9S|1|R1|C|131
9F9S|1|R1|U|132
9F9S|1|R1|U|133
9F9S|1|R1|U|134
9F9S|1|R1|A|135
9F9S|1|R1|C|136
9F9S|1|R1|U|137
9F9S|1|R1|A|138
9F9S|1|R1|C|139
9F9S|1|R1|A|140
9F9S|1|R1|U|141
9F9S|1|R1|G|142
9F9S|1|R1|G|143
*
9F9S|1|R1|C|172
9F9S|1|R1|A|173
9F9S|1|R1|U|174
9F9S|1|R1|G|175
9F9S|1|R1|C|176
9F9S|1|R1|U|177
9F9S|1|R1|U|178
9F9S|1|R1|A|179
9F9S|1|R1|A|180
9F9S|1|R1|A|181
9F9S|1|R1|A|182
*
9F9S|1|R1|U|203
9F9S|1|R1|G|204
*
9F9S|1|R1|C|263
9F9S|1|R1|G|264
9F9S|1|R1|A|265
9F9S|1|R1|A|266
9F9S|1|R1|U|267
*
9F9S|1|R1|A|288
9F9S|1|R1|U|289
9F9S|1|R1|G|290
9F9S|1|R1|G|291
9F9S|1|R1|U|292
9F9S|1|R1|U|293

Current chains

Chain R1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain Re

40S ribosomal protein S4-A

Chain Rg

40S ribosomal protein S6-A

Chain Ri

40S ribosomal protein S8-A