J5_9F9S_017
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- ACUUUGG*CUUUCCUUCU*AGGACUUU*AUAGAAUAGGA*UAAUGAU
- Length
- 43 nucleotides
- Bulged bases
- 9F9S|1|R1|U|638, 9F9S|1|R1|U|639, 9F9S|1|R1|U|640, 9F9S|1|R1|G|641, 9F9S|1|R1|C|696, 9F9S|1|R1|C|697, 9F9S|1|R1|U|742, 9F9S|1|R1|U|813, 9F9S|1|R1|G|815, 9F9S|1|R1|A|856
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9F9S|1|R1|A|636
9F9S|1|R1|C|637
9F9S|1|R1|U|638
9F9S|1|R1|U|639
9F9S|1|R1|U|640
9F9S|1|R1|G|641
9F9S|1|R1|G|642
*
9F9S|1|R1|C|692
9F9S|1|R1|U|693
9F9S|1|R1|U|694
9F9S|1|R1|U|695
9F9S|1|R1|C|696
9F9S|1|R1|C|697
9F9S|1|R1|U|698
9F9S|1|R1|U|699
9F9S|1|R1|C|700
9F9S|1|R1|U|701
*
9F9S|1|R1|A|737
9F9S|1|R1|G|738
9F9S|1|R1|G|739
9F9S|1|R1|A|740
9F9S|1|R1|C|741
9F9S|1|R1|U|742
9F9S|1|R1|U|743
9F9S|1|R1|U|744
*
9F9S|1|R1|A|807
9F9S|1|R1|U|808
9F9S|1|R1|A|809
9F9S|1|R1|G|810
9F9S|1|R1|A|811
9F9S|1|R1|A|812
9F9S|1|R1|U|813
9F9S|1|R1|A|814
9F9S|1|R1|G|815
9F9S|1|R1|G|816
9F9S|1|R1|A|817
*
9F9S|1|R1|U|854
9F9S|1|R1|A|855
9F9S|1|R1|A|856
9F9S|1|R1|U|857
9F9S|1|R1|G|858
9F9S|1|R1|A|859
9F9S|1|R1|U|860
Current chains
- Chain R1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)
Nearby chains
- Chain MM
- 60S ribosomal protein L19-A
- Chain Re
- 40S ribosomal protein S4-A
- Chain Rh
- 40S ribosomal protein S7-A
- Chain Rl
- 40S ribosomal protein S11-A
- Chain Rn
- 40S ribosomal protein S13
- Chain Rw
- 40S ribosomal protein S22-A
Coloring options: