J5_9F9S_022

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACUUUG*UUUCCUU*GACUUU*AUAGAAUAGGA*UAAUGAU

Length

37 nucleotides

Bulged bases

9F9S|1|S1|U|694, 9F9S|1|S1|C|696, 9F9S|1|S1|C|697, 9F9S|1|S1|U|698, 9F9S|1|S1|U|813, 9F9S|1|S1|G|815, 9F9S|1|S1|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9F9S|1|S1|A|636
9F9S|1|S1|C|637
9F9S|1|S1|U|638
9F9S|1|S1|U|639
9F9S|1|S1|U|640
9F9S|1|S1|G|641
*
9F9S|1|S1|U|693
9F9S|1|S1|U|694
9F9S|1|S1|U|695
9F9S|1|S1|C|696
9F9S|1|S1|C|697
9F9S|1|S1|U|698
9F9S|1|S1|U|699
*
9F9S|1|S1|G|739
9F9S|1|S1|A|740
9F9S|1|S1|C|741
9F9S|1|S1|U|742
9F9S|1|S1|U|743
9F9S|1|S1|U|744
*
9F9S|1|S1|A|807
9F9S|1|S1|U|808
9F9S|1|S1|A|809
9F9S|1|S1|G|810
9F9S|1|S1|A|811
9F9S|1|S1|A|812
9F9S|1|S1|U|813
9F9S|1|S1|A|814
9F9S|1|S1|G|815
9F9S|1|S1|G|816
9F9S|1|S1|A|817
*
9F9S|1|S1|U|854
9F9S|1|S1|A|855
9F9S|1|S1|A|856
9F9S|1|S1|U|857
9F9S|1|S1|G|858
9F9S|1|S1|A|859
9F9S|1|S1|U|860

Current chains

Chain S1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain LM

60S ribosomal protein L19-A

Chain Se

40S ribosomal protein S4-A

Chain Sh

40S ribosomal protein S7-A

Chain Sl

40S ribosomal protein S11-A

Chain Sn

40S ribosomal protein S13

Chain Sw

40S ribosomal protein S22-A