3D structure

PDB id
9G06 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of 30S-IF1-IF3-mRNA-fMet-tRNA-GE81112A complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.85 Å

Loop

Sequence
CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG
Length
28 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_9G06_002 not in the Motif Atlas
Homologous match to J5_5J7L_002
Geometric discrepancy: 0.0344
The information below is about J5_5J7L_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_67416.1
Basepair signature
cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F
Number of instances in this motif group
1

Unit IDs

9G06|1|B|C|36
9G06|1|B|U|37
9G06|1|B|G|38
9G06|1|B|G|39
*
9G06|1|B|C|403
9G06|1|B|G|404
9G06|1|B|U|405
9G06|1|B|G|406
*
9G06|1|B|C|436
9G06|1|B|U|437
9G06|1|B|U|438
9G06|1|B|U|439
9G06|1|B|C|440
9G06|1|B|A|441
9G06|1|B|G|442
*
9G06|1|B|C|492
9G06|1|B|A|493
9G06|1|B|G|494
9G06|1|B|A|495
9G06|1|B|A|496
9G06|1|B|G|497
9G06|1|B|A|498
9G06|1|B|A|499
9G06|1|B|G|500
*
9G06|1|B|C|545
9G06|1|B|A|546
9G06|1|B|A|547
9G06|1|B|G|548

Current chains

Chain B
16S ribosomal RNA

Nearby chains

Chain D
Small ribosomal subunit protein uS4
Chain L
Small ribosomal subunit protein uS12

Coloring options:


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