J5_9G1Z_008
3D structure
- PDB id
- 9G1Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 9G1Z|1|A|A|93, 9G1Z|1|A|C|422
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9G1Z_008 not in the Motif Atlas
- Homologous match to J5_8CRE_020
- Geometric discrepancy: 0.0622
- The information below is about J5_8CRE_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.1
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9G1Z|1|A|C|54
9G1Z|1|A|A|55
9G1Z|1|A|U|56
9G1Z|1|A|G|57
*
9G1Z|1|A|C|90
9G1Z|1|A|G|91
9G1Z|1|A|A|92
9G1Z|1|A|A|93
9G1Z|1|A|U|94
9G1Z|1|A|G|95
9G1Z|1|A|G|96
9G1Z|1|A|C|97
*
9G1Z|1|A|G|384
9G1Z|1|A|A|385
9G1Z|1|A|G|386
*
9G1Z|1|A|C|407
9G1Z|1|A|A|408
9G1Z|1|A|C|409
*
9G1Z|1|A|G|420
9G1Z|1|A|G|421
9G1Z|1|A|C|422
9G1Z|1|A|A|423
9G1Z|1|A|G|424
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain 6
- Ribosomal 60S subunit protein L23B
- Chain F
- 40S ribosomal protein S4
- Chain H
- 40S ribosomal protein S6
- Chain J
- 40S ribosomal protein S8
- Chain K
- Ribosomal 40S subunit protein S9B
- Chain Z
- 40S ribosomal protein S24
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