J5_9G33_003

3D structure

PDB id

9G33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stalled 90S - Utp23-Krr1-deltaC3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G33|1|D3|C|31
9G33|1|D3|U|32
9G33|1|D3|U|33
9G33|1|D3|G|34
9G33|1|D3|U|35
*
9G33|1|D3|A|473
9G33|1|D3|A|474
9G33|1|D3|A|475
9G33|1|D3|U|476
9G33|1|D3|A|477
9G33|1|D3|A|478
9G33|1|D3|C|479
*
9G33|1|D3|G|509
9G33|1|D3|G|510
9G33|1|D3|A|511
9G33|1|D3|A|512
9G33|1|D3|U|513
9G33|1|D3|G|514
9G33|1|D3|A|515
9G33|1|D3|G|516
*
9G33|1|D3|C|536
9G33|1|D3|G|537
9G33|1|D3|A|538
9G33|1|D3|G|539
9G33|1|D3|G|540
9G33|1|D3|A|541
9G33|1|D3|A|542
9G33|1|D3|C|543
9G33|1|D3|A|544
9G33|1|D3|A|545
9G33|1|D3|U|546
*
9G33|1|D3|A|592
9G33|1|D3|U|593
9G33|1|D3|A|594
9G33|1|D3|G|595

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CL

Ribosome biogenesis protein BMS1

Chain DJ

40S ribosomal protein S9-A

Chain DX

40S ribosomal protein S23-A

Chain JE

U3 small nucleolar ribonucleoprotein protein LCP5

Chain UC

Something about silencing protein 10