J5_9G6J_004
3D structure
- PDB id
- 9G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 9G6J|1|1|G|2094, 9G6J|1|1|G|2099
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9G6J_004 not in the Motif Atlas
- Homologous match to J5_8CRE_004
- Geometric discrepancy: 0.044
- The information below is about J5_8CRE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9G6J|1|1|G|1902
9G6J|1|1|C|1903
9G6J|1|1|A|1904
9G6J|1|1|A|1905
9G6J|1|1|A|1906
9G6J|1|1|A|1907
9G6J|1|1|U|1908
9G6J|1|1|A|1909
9G6J|1|1|G|1910
*
9G6J|1|1|U|1934
9G6J|1|1|G|1935
*
9G6J|1|1|U|2087
9G6J|1|1|G|2088
*
9G6J|1|1|C|2092
9G6J|1|1|G|2093
9G6J|1|1|G|2094
9G6J|1|1|A|2095
9G6J|1|1|C|2096
9G6J|1|1|A|2097
9G6J|1|1|A|2098
9G6J|1|1|G|2099
9G6J|1|1|G|2100
*
9G6J|1|1|C|2309
9G6J|1|1|A|2310
9G6J|1|1|C|2311
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 6
- Ribosomal 60S subunit protein L23B
- Chain 7
- Ribosomal 60S subunit protein L24A
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain k
- 60S ribosomal protein L3
- Chain z
- Ribosomal protein L19
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