J5_9G6J_005
3D structure
- PDB id
- 9G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 9G6J|1|1|A|2382, 9G6J|1|1|A|2789, 9G6J|1|1|U|2845, 9G6J|1|1|G|2846, 9G6J|1|1|U|2847, 9G6J|1|1|U|2950, 9G6J|1|1|U|2951
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9G6J|1|1|A|2377
9G6J|1|1|G|2378
9G6J|1|1|A|2379
9G6J|1|1|A|2380
9G6J|1|1|G|2381
9G6J|1|1|A|2382
9G6J|1|1|C|2383
9G6J|1|1|C|2384
*
9G6J|1|1|G|2787
9G6J|1|1|G|2788
9G6J|1|1|A|2789
9G6J|1|1|U|2790
9G6J|1|1|A|2791
9G6J|1|1|A|2792
9G6J|1|1|C|2793
9G6J|1|1|U|2794
9G6J|1|1|G|2795
*
9G6J|1|1|C|2839
9G6J|1|1|U|2840
9G6J|1|1|U|2841
9G6J|1|1|C|2842
9G6J|1|1|G|2843
9G6J|1|1|A|2844
9G6J|1|1|U|2845
9G6J|1|1|G|2846
9G6J|1|1|U|2847
9G6J|1|1|C|2848
*
9G6J|1|1|G|2923
9G6J|1|1|G|2924
9G6J|1|1|U|2925
9G6J|1|1|U|2926
9G6J|1|1|U|2927
9G6J|1|1|A|2928
9G6J|1|1|G|2929
*
9G6J|1|1|U|2947
9G6J|1|1|A|2948
9G6J|1|1|G|2949
9G6J|1|1|U|2950
9G6J|1|1|U|2951
9G6J|1|1|U|2952
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain AB
- Ribosomal 60S subunit protein L28
- Chain AC
- 60S ribosomal protein L29
- Chain AT
- Transfer RNA; tRNA
- Chain PT
- Transfer RNA; tRNA
- Chain j
- Ribosomal 60S subunit protein L2A
- Chain k
- 60S ribosomal protein L3
- Chain l
- Ribosomal 60S subunit protein L4B
- Chain r
- Ribosomal 60S subunit protein L10
Coloring options: