Loop J5_9G8M

3D structure

PDB id: 9G8M (explore in PDB, NAKB, or RNA 3D Hub)
Description: human 80S ribosome bound by a SKI2-exosome complex
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å

Loop

Sequence: AAGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUUU
Length: 42 nucleotides
Bulged bases: 9G8M|1|L5|A|3906, 9G8M|1|L5|A|4392, 9G8M|1|L5|G|4449, 9G8M|1|L5|U|4553, 9G8M|1|L5|U|4554
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9G8M|1|L5|A|3900
9G8M|1|L5|A|3901
9G8M|1|L5|G|3902
9G8M|1|L5|A|3903
9G8M|1|L5|A|3904
9G8M|1|L5|G|3905
9G8M|1|L5|A|3906
9G8M|1|L5|C|3907
9G8M|1|L5|C|3908
*
9G8M|1|L5|G|4390
9G8M|1|L5|G|4391
9G8M|1|L5|A|4392
9G8M|1|L5|U|4393
9G8M|1|L5|A|4394
9G8M|1|L5|A|4395
9G8M|1|L5|C|4396
9G8M|1|L5|U|4397
9G8M|1|L5|G|4398
*
9G8M|1|L5|C|4442
9G8M|1|L5|U|4443
9G8M|1|L5|U|4444
9G8M|1|L5|C|4445
9G8M|1|L5|G|4446
9G8M|1|L5|A|4447
9G8M|1|L5|U|4448
9G8M|1|L5|G|4449
9G8M|1|L5|U|4450
9G8M|1|L5|C|4451
*
9G8M|1|L5|G|4526
9G8M|1|L5|G|4527
9G8M|1|L5|U|4528
9G8M|1|L5|U|4529
9G8M|1|L5|U|4530
9G8M|1|L5|A|4531
9G8M|1|L5|G|4532
*
9G8M|1|L5|U|4550
9G8M|1|L5|A|4551
9G8M|1|L5|G|4552
9G8M|1|L5|U|4553
9G8M|1|L5|U|4554
9G8M|1|L5|U|4555
9G8M|1|L5|U|4556

Current chains

Chain L5: 28S ribosomal RNA

Nearby chains

Chain LA: 60S ribosomal protein L8
Chain LB: 60S ribosomal protein L3
Chain LC: 60S ribosomal protein L4
Chain LI: Ribosomal protein uL16-like
Chain Lb: 60S ribosomal protein L29

J5_9G8M_004