J5_9G8M_008

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUCGCUCGCUCCUCUCCCACUUG*CAUGCCGACGGGC*GUGCAUU*ACCUCGGGCCGAU*ACGACC

Length

62 nucleotides

Bulged bases

9G8M|1|S2|U|128, 9G8M|1|S2|C|129, 9G8M|1|S2|G|130, 9G8M|1|S2|C|131, 9G8M|1|S2|U|132, 9G8M|1|S2|C|133, 9G8M|1|S2|C|134, 9G8M|1|S2|U|135, 9G8M|1|S2|C|136, 9G8M|1|S2|U|137, 9G8M|1|S2|C|138, 9G8M|1|S2|C|139, 9G8M|1|S2|C|140, 9G8M|1|S2|C|142, 9G8M|1|S2|U|143, 9G8M|1|S2|G|183, 9G8M|1|S2|U|305, 9G8M|1|S2|C|306, 9G8M|1|S2|G|307, 9G8M|1|S2|G|308

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G8M|1|S2|G|123
9G8M|1|S2|U|124
9G8M|1|S2|C|125
9G8M|1|S2|G|126
9G8M|1|S2|C|127
9G8M|1|S2|U|128
9G8M|1|S2|C|129
9G8M|1|S2|G|130
9G8M|1|S2|C|131
9G8M|1|S2|U|132
9G8M|1|S2|C|133
9G8M|1|S2|C|134
9G8M|1|S2|U|135
9G8M|1|S2|C|136
9G8M|1|S2|U|137
9G8M|1|S2|C|138
9G8M|1|S2|C|139
9G8M|1|S2|C|140
9G8M|1|S2|A|141
9G8M|1|S2|C|142
9G8M|1|S2|U|143
9G8M|1|S2|U|144
9G8M|1|S2|G|145
*
9G8M|1|S2|C|174
9G8M|1|S2|A|175
9G8M|1|S2|U|176
9G8M|1|S2|G|177
9G8M|1|S2|C|178
9G8M|1|S2|C|179
9G8M|1|S2|G|180
9G8M|1|S2|A|181
9G8M|1|S2|C|182
9G8M|1|S2|G|183
9G8M|1|S2|G|184
9G8M|1|S2|G|185
9G8M|1|S2|C|186
*
9G8M|1|S2|G|213
9G8M|1|S2|U|214
9G8M|1|S2|G|215
9G8M|1|S2|C|216
9G8M|1|S2|A|217
9G8M|1|S2|U|218
9G8M|1|S2|U|219
*
9G8M|1|S2|A|302
9G8M|1|S2|C|303
9G8M|1|S2|C|304
9G8M|1|S2|U|305
9G8M|1|S2|C|306
9G8M|1|S2|G|307
9G8M|1|S2|G|308
9G8M|1|S2|G|309
9G8M|1|S2|C|310
9G8M|1|S2|C|311
9G8M|1|S2|G|312
9G8M|1|S2|A|313
9G8M|1|S2|U|314
*
9G8M|1|S2|A|336
9G8M|1|S2|C|337
9G8M|1|S2|G|338
9G8M|1|S2|A|339
9G8M|1|S2|C|340
9G8M|1|S2|C|341

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain LW

60S ribosomal protein L24

Chain SE

40S ribosomal protein S4, X isoform

Chain SG

40S ribosomal protein S6

Chain SI

40S ribosomal protein S8