J5_9GFT_004

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9GFT_004 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0746

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

9GFT|1|AA|C|36
9GFT|1|AA|U|37
9GFT|1|AA|G|38
9GFT|1|AA|G|39
*
9GFT|1|AA|C|403
9GFT|1|AA|G|404
9GFT|1|AA|U|405
9GFT|1|AA|G|406
*
9GFT|1|AA|C|436
9GFT|1|AA|U|437
9GFT|1|AA|U|438
9GFT|1|AA|U|439
9GFT|1|AA|C|440
9GFT|1|AA|A|441
9GFT|1|AA|G|442
*
9GFT|1|AA|C|492
9GFT|1|AA|A|493
9GFT|1|AA|G|494
9GFT|1|AA|A|495
9GFT|1|AA|A|496
9GFT|1|AA|G|497
9GFT|1|AA|A|498
9GFT|1|AA|A|499
9GFT|1|AA|G|500
*
9GFT|1|AA|C|545
9GFT|1|AA|A|546
9GFT|1|AA|A|547
9GFT|1|AA|G|548

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

Small ribosomal subunit protein uS4

Chain z

Small ribosomal subunit protein uS12