J5_9GFT_005
3D structure
- PDB id
- 9GFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 9GFT|1|AA|A|109, 9GFT|1|AA|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9GFT_005 not in the Motif Atlas
- Homologous match to J5_5J7L_003
- Geometric discrepancy: 0.0922
- The information below is about J5_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9GFT|1|AA|C|58
9GFT|1|AA|A|59
9GFT|1|AA|A|60
9GFT|1|AA|G|61
*
9GFT|1|AA|C|106
9GFT|1|AA|G|107
9GFT|1|AA|G|108
9GFT|1|AA|A|109
9GFT|1|AA|C|110
9GFT|1|AA|G|111
9GFT|1|AA|G|112
9GFT|1|AA|G|113
*
9GFT|1|AA|C|314
9GFT|1|AA|A|315
9GFT|1|AA|C|316
*
9GFT|1|AA|G|337
9GFT|1|AA|A|338
9GFT|1|AA|C|339
*
9GFT|1|AA|G|350
9GFT|1|AA|G|351
9GFT|1|AA|C|352
9GFT|1|AA|A|353
9GFT|1|AA|G|354
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AO
- Small ribosomal subunit protein bS16
- Chain AS
- Small ribosomal subunit protein bS20
- Chain Af
- Large ribosomal subunit protein uL14
- Chain Ak
- Large ribosomal subunit protein bL19
- Chain U
- Large ribosomal subunit protein bL9
Coloring options: