J5_9GFT_006

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

9GFT|1|AV|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9GFT_006 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1276

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9GFT|1|AV|C|47
9GFT|1|AV|G|48
9GFT|1|AV|A|49
9GFT|1|AV|U|50
9GFT|1|AV|G|51
9GFT|1|AV|A|52
9GFT|1|AV|A|53
9GFT|1|AV|G|54
*
9GFT|1|AV|C|116
9GFT|1|AV|G|117
9GFT|1|AV|A|118
9GFT|1|AV|A|119
9GFT|1|AV|U|120
9GFT|1|AV|G|121
*
9GFT|1|AV|C|130
9GFT|1|AV|A|131
*
9GFT|1|AV|U|148
9GFT|1|AV|A|149
9GFT|1|AV|U|150
*
9GFT|1|AV|A|176
9GFT|1|AV|G|177
9GFT|1|AV|G|178

Current chains

Chain AV

23S RNA

Nearby chains

Chain Ax

Large ribosomal subunit protein bL34