J5_9GFT_010

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCGAUGUC*GGUUUAG*CGGUCC

Length

37 nucleotides

Bulged bases

9GFT|1|AV|A|2062, 9GFT|1|AV|A|2448, 9GFT|1|AV|U|2609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9GFT|1|AV|G|2057
9GFT|1|AV|A|2058
9GFT|1|AV|A|2059
9GFT|1|AV|A|2060
9GFT|1|AV|G|2061
9GFT|1|AV|A|2062
9GFT|1|AV|C|2063
9GFT|1|AV|C|2064
*
9GFT|1|AV|G|2446
9GFT|1|AV|G|2447
9GFT|1|AV|A|2448
9GFT|1|AV|U|2449
9GFT|1|AV|A|2450
9GFT|1|AV|A|2451
9GFT|1|AV|C|2452
9GFT|1|AV|A|2453
*
9GFT|1|AV|U|2500
9GFT|1|AV|C|2501
9GFT|1|AV|G|2502
9GFT|1|AV|A|2503
9GFT|1|AV|U|2504
9GFT|1|AV|G|2505
9GFT|1|AV|U|2506
9GFT|1|AV|C|2507
*
9GFT|1|AV|G|2582
9GFT|1|AV|G|2583
9GFT|1|AV|U|2584
9GFT|1|AV|U|2585
9GFT|1|AV|U|2586
9GFT|1|AV|A|2587
9GFT|1|AV|G|2588
*
9GFT|1|AV|C|2606
9GFT|1|AV|G|2607
9GFT|1|AV|G|2608
9GFT|1|AV|U|2609
9GFT|1|AV|C|2610
9GFT|1|AV|C|2611

Current chains

Chain AV

23S RNA

Nearby chains

Chain A3

Transfer RNA; tRNA

Chain AU

Transfer RNA; tRNA

Chain AX

Large ribosomal subunit protein uL2

Chain AY

50S ribosomal protein L3

Chain AZ

Large ribosomal subunit protein uL4

Chain Ag

Large ribosomal subunit protein uL15

Chain Ah

50S ribosomal protein L16

Chain An

Large ribosomal subunit protein uL22

Chain Av

Large ribosomal subunit protein bL32