J5_9GGR_007
3D structure
- PDB id
- 9GGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAG*CGUAC*GGG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 9GGR|1|AV|A|532, 9GGR|1|AV|U|562
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9GGR_007 not in the Motif Atlas
- Homologous match to J5_5J7L_014
- Geometric discrepancy: 0.0866
- The information below is about J5_5J7L_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.5
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9GGR|1|AV|C|531
9GGR|1|AV|A|532
9GGR|1|AV|G|533
*
9GGR|1|AV|C|560
9GGR|1|AV|G|561
9GGR|1|AV|U|562
9GGR|1|AV|A|563
9GGR|1|AV|C|564
*
9GGR|1|AV|G|577
9GGR|1|AV|G|578
9GGR|1|AV|G|579
*
9GGR|1|AV|C|1261
9GGR|1|AV|A|1262
*
9GGR|1|AV|U|2017
9GGR|1|AV|G|2018
Current chains
- Chain AV
- 23S ribosomal RNA
Nearby chains
- Chain AZ
- Large ribosomal subunit protein uL4
- Chain Ae
- Large ribosomal subunit protein uL13
- Chain Al
- Large ribosomal subunit protein bL20
- Chain Am
- Large ribosomal subunit protein bL21
- Chain An
- Large ribosomal subunit protein uL22
- Chain Av
- Large ribosomal subunit protein bL32
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