3D structure

PDB id
9GGR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HrpA-bound E. coli disome, Class II
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GCAAAAUGG*CG*UC*GAUACCAGC*GGC
Length
25 nucleotides
Bulged bases
9GGR|1|N|U|1758, 9GGR|1|N|G|1763
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_9GGR_015 not in the Motif Atlas
Homologous match to J5_5J7L_016
Geometric discrepancy: 0.0973
The information below is about J5_5J7L_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_62523.6
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

9GGR|1|N|G|1674
9GGR|1|N|C|1675
9GGR|1|N|A|1676
9GGR|1|N|A|1677
9GGR|1|N|A|1678
9GGR|1|N|A|1679
9GGR|1|N|U|1680
9GGR|1|N|G|1681
9GGR|1|N|G|1682
*
9GGR|1|N|C|1706
9GGR|1|N|G|1707
*
9GGR|1|N|U|1751
9GGR|1|N|C|1752
*
9GGR|1|N|G|1756
9GGR|1|N|A|1757
9GGR|1|N|U|1758
9GGR|1|N|A|1759
9GGR|1|N|C|1760
9GGR|1|N|C|1761
9GGR|1|N|A|1762
9GGR|1|N|G|1763
9GGR|1|N|C|1764
*
9GGR|1|N|G|1988
9GGR|1|N|G|1989
9GGR|1|N|C|1990

Current chains

Chain N
23S ribosomal RNA

Nearby chains

Chain 0
Small subunit ribosomal RNA; SSU rRNA
Chain Q
50S ribosomal protein L3
Chain X
Large ribosomal subunit protein uL14
Chain c
Large ribosomal subunit protein bL19

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.203 s