3D structure

PDB id
9GHH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
CCAAAC*GGGUUGUA*UGAGUAC*GGAAUCUG*UAAG
Length
33 nucleotides
Bulged bases
9GHH|1|A|U|301, 9GHH|1|A|U|451
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9GHH|1|A|C|271
9GHH|1|A|C|272
9GHH|1|A|A|273
9GHH|1|A|A|274
9GHH|1|A|A|275
9GHH|1|A|C|276
*
9GHH|1|A|G|295
9GHH|1|A|G|296
9GHH|1|A|G|297
9GHH|1|A|U|298
9GHH|1|A|U|299
9GHH|1|A|G|300
9GHH|1|A|U|301
9GHH|1|A|A|302
*
9GHH|1|A|U|415
9GHH|1|A|G|416
9GHH|1|A|A|417
9GHH|1|A|G|418
9GHH|1|A|U|419
9GHH|1|A|A|420
9GHH|1|A|C|421
*
9GHH|1|A|G|445
9GHH|1|A|G|446
9GHH|1|A|A|447
9GHH|1|A|A|448
9GHH|1|A|U|449
9GHH|1|A|C|450
9GHH|1|A|U|451
9GHH|1|A|G|452
*
9GHH|1|A|U|467
9GHH|1|A|A|468
9GHH|1|A|A|469
9GHH|1|A|G|470

Current chains

Chain A
23S rRNA

Nearby chains

Chain 1
50S ribosomal protein L28

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.3223 s