Loop J5_9GMO

3D structure

PDB id: 9GMO (explore in PDB, NAKB, or RNA 3D Hub)
Description: eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.59 Å

Loop

Sequence: AGAAGACC*(OMG)GAUAACUG*CUU(5MC)GAUGUC*GG(UR3)U(PSU)AG*(PSU)AGUUU
Length: 40 nucleotides
Bulged bases: 9GMO|1|A|A|3908, 9GMO|1|A|A|4394, 9GMO|1|A|U|4450, 9GMO|1|A|G|4451, 9GMO|1|A|U|4452, 9GMO|1|A|U|4555, 9GMO|1|A|U|4556
QA status: Modified nucleotides: OMG, 5MC, UR3, PSU

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9GMO|1|A|A|3903
9GMO|1|A|G|3904
9GMO|1|A|A|3905
9GMO|1|A|A|3906
9GMO|1|A|G|3907
9GMO|1|A|A|3908
9GMO|1|A|C|3909
9GMO|1|A|C|3910
*
9GMO|1|A|OMG|4392
9GMO|1|A|G|4393
9GMO|1|A|A|4394
9GMO|1|A|U|4395
9GMO|1|A|A|4396
9GMO|1|A|A|4397
9GMO|1|A|C|4398
9GMO|1|A|U|4399||A
9GMO|1|A|G|4400
*
9GMO|1|A|C|4444
9GMO|1|A|U|4445
9GMO|1|A|U|4446
9GMO|1|A|5MC|4447
9GMO|1|A|G|4448
9GMO|1|A|A|4449
9GMO|1|A|U|4450
9GMO|1|A|G|4451
9GMO|1|A|U|4452
9GMO|1|A|C|4453
*
9GMO|1|A|G|4528
9GMO|1|A|G|4529
9GMO|1|A|UR3|4530
9GMO|1|A|U|4531
9GMO|1|A|PSU|4532
9GMO|1|A|A|4533
9GMO|1|A|G|4534
*
9GMO|1|A|PSU|4552
9GMO|1|A|A|4553
9GMO|1|A|G|4554
9GMO|1|A|U|4555
9GMO|1|A|U|4556
9GMO|1|A|U|4557

Current chains

Chain A: 28S rRNA

Nearby chains

Chain 0: Cytoplasmic 60S subunit biogenesis factor ZNF622
Chain D: 60S ribosomal protein L8
Chain E: 60S ribosomal protein L3
Chain F: 60S ribosomal protein L4
Chain V: 60S ribosomal protein L29

J5_9GMO_004