J5_9GMO_005
3D structure
- PDB id
- 9GMO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- (PSU)UGA*UUUG*CA*(OMU)(OMG)*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 9GMO|1|A|G|3922, 9GMO|1|A|A|4376, 9GMO|1|A|G|4377, 9GMO|1|A|A|4378, 9GMO|1|A|A|4379
- QA status
- Modified nucleotides: PSU, OMU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9GMO_005 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.3113
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
9GMO|1|A|PSU|3920
9GMO|1|A|U|3921
9GMO|1|A|G|3922
9GMO|1|A|A|3923
*
9GMO|1|A|U|4188
9GMO|1|A|U|4189
9GMO|1|A|U|4190
9GMO|1|A|G|4191
*
9GMO|1|A|C|4204
9GMO|1|A|A|4205
*
9GMO|1|A|OMU|4227
9GMO|1|A|OMG|4228
*
9GMO|1|A|C|4375
9GMO|1|A|A|4376
9GMO|1|A|G|4377
9GMO|1|A|A|4378
9GMO|1|A|A|4379
9GMO|1|A|A|4380
9GMO|1|A|A|4381
Current chains
- Chain A
- 28S rRNA
Nearby chains
- Chain D
- 60S ribosomal protein L8
- Chain K
- 60S ribosomal protein L18
- Chain N
- 60S ribosomal protein L21
- Chain U
- 60S ribosomal protein L27a
- Chain V
- 60S ribosomal protein L29
- Chain i
- 60S ribosomal protein L36a
- Chain l
- 60S ribosomal protein L15
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