J5_9GUS_003

3D structure

PDB id

9GUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S mRNA delivery complex TEC resolved (30S only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

9GUS|1|A|A|109, 9GUS|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9GUS_003 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.1007

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

9GUS|1|A|C|58
9GUS|1|A|A|59
9GUS|1|A|A|60
9GUS|1|A|G|61
*
9GUS|1|A|C|106
9GUS|1|A|G|107
9GUS|1|A|G|108
9GUS|1|A|A|109
9GUS|1|A|C|110
9GUS|1|A|G|111
9GUS|1|A|G|112
9GUS|1|A|G|113
*
9GUS|1|A|C|314
9GUS|1|A|A|315
9GUS|1|A|C|316
*
9GUS|1|A|G|337
9GUS|1|A|A|338
9GUS|1|A|C|339
*
9GUS|1|A|G|350
9GUS|1|A|G|351
9GUS|1|A|C|352
9GUS|1|A|A|353
9GUS|1|A|G|354

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain Q

30S ribosomal protein S16

Chain U

30S ribosomal protein S20