J5_9H3G_008

3D structure

PDB id

9H3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.82 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGG(A2M)UCCAU*AUA(OMG)

Length

35 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H3G|1|h1|C|31
9H3G|1|h1|U|32
9H3G|1|h1|U|33
9H3G|1|h1|G|34
9H3G|1|h1|U|35
*
9H3G|1|h1|A|475
9H3G|1|h1|A|476
9H3G|1|h1|A|477
9H3G|1|h1|U|478
9H3G|1|h1|A|479
9H3G|1|h1|A|480
9H3G|1|h1|C|481
*
9H3G|1|h1|G|511
9H3G|1|h1|G|512
9H3G|1|h1|A|513
9H3G|1|h1|A|514
9H3G|1|h1|U|515
9H3G|1|h1|G|516
9H3G|1|h1|A|517
9H3G|1|h1|G|518
*
9H3G|1|h1|C|538
9H3G|1|h1|G|539
9H3G|1|h1|A|540
9H3G|1|h1|G|541
9H3G|1|h1|G|542
9H3G|1|h1|A2M|543
9H3G|1|h1|U|544
9H3G|1|h1|C|545
9H3G|1|h1|C|546
9H3G|1|h1|A|547
9H3G|1|h1|U|548
*
9H3G|1|h1|A|594
9H3G|1|h1|U|595
9H3G|1|h1|A|596
9H3G|1|h1|OMG|597

Current chains

Chain h1

Ribosomal RNA 18S

Nearby chains

Chain AB

Small ribosomal subunit protein uS4y

Chain Ka

Small ribosomal subunit protein eS24y

Chain Pa

Small ribosomal subunit protein eS30z/eS30y/eS30x

Chain Va

Small ribosomal subunit protein uS12y