J5_9H3G_010

3D structure

PDB id

9H3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.82 Å

Loop

Sequence

GGUAACUACUACUC*GUGCAACAAACC*GACG*CGG*CGC

Length

36 nucleotides

Bulged bases

9H3G|1|h1|A|131, 9H3G|1|h1|C|132, 9H3G|1|h1|U|133, 9H3G|1|h1|A|134, 9H3G|1|h1|C|135, 9H3G|1|h1|C|138, 9H3G|1|h1|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H3G|1|h1|G|127
9H3G|1|h1|G|128
9H3G|1|h1|U|129
9H3G|1|h1|A|130
9H3G|1|h1|A|131
9H3G|1|h1|C|132
9H3G|1|h1|U|133
9H3G|1|h1|A|134
9H3G|1|h1|C|135
9H3G|1|h1|U|136
9H3G|1|h1|A|137
9H3G|1|h1|C|138
9H3G|1|h1|U|139
9H3G|1|h1|C|140
*
9H3G|1|h1|G|171
9H3G|1|h1|U|172
9H3G|1|h1|G|173
9H3G|1|h1|C|174
9H3G|1|h1|A|175
9H3G|1|h1|A|176
9H3G|1|h1|C|177
9H3G|1|h1|A|178
9H3G|1|h1|A|179
9H3G|1|h1|A|180
9H3G|1|h1|C|181
9H3G|1|h1|C|182
*
9H3G|1|h1|G|198
9H3G|1|h1|A|199
9H3G|1|h1|C|200
9H3G|1|h1|G|201
*
9H3G|1|h1|C|264
9H3G|1|h1|G|265
9H3G|1|h1|G|266
*
9H3G|1|h1|C|291
9H3G|1|h1|G|292
9H3G|1|h1|C|293

Current chains

Chain h1

Ribosomal RNA 18S

Nearby chains

Chain Ja

Small ribosomal subunit protein eS4x

Chain Ta

Small ribosomal subunit protein eS6y