J5_9H3Q_004

3D structure

PDB id

9H3Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_(L22)-~H61

Experimental method

ELECTRON MICROSCOPY

Resolution

4.02 Å

Loop

Sequence

ACGGAAAGACC*GGAUAACAG*CCUCGAUGUC*GGUUUAG*CGGUCCCUAU

Length

47 nucleotides

Bulged bases

9H3Q|1|A|A|2448, 9H3Q|1|A|U|2585, 9H3Q|1|A|U|2586, 9H3Q|1|A|A|2587, 9H3Q|1|A|U|2609, 9H3Q|1|A|C|2611, 9H3Q|1|A|U|2613

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H3Q|1|A|A|2054
9H3Q|1|A|C|2055
9H3Q|1|A|G|2056
9H3Q|1|A|G|2057
9H3Q|1|A|A|2058
9H3Q|1|A|A|2059
9H3Q|1|A|A|2060
9H3Q|1|A|G|2061
9H3Q|1|A|A|2062
9H3Q|1|A|C|2063
9H3Q|1|A|C|2064
*
9H3Q|1|A|G|2446
9H3Q|1|A|G|2447
9H3Q|1|A|A|2448
9H3Q|1|A|U|2449
9H3Q|1|A|A|2450
9H3Q|1|A|A|2451
9H3Q|1|A|C|2452
9H3Q|1|A|A|2453
9H3Q|1|A|G|2454
*
9H3Q|1|A|C|2498
9H3Q|1|A|C|2499
9H3Q|1|A|U|2500
9H3Q|1|A|C|2501
9H3Q|1|A|G|2502
9H3Q|1|A|A|2503
9H3Q|1|A|U|2504
9H3Q|1|A|G|2505
9H3Q|1|A|U|2506
9H3Q|1|A|C|2507
*
9H3Q|1|A|G|2582
9H3Q|1|A|G|2583
9H3Q|1|A|U|2584
9H3Q|1|A|U|2585
9H3Q|1|A|U|2586
9H3Q|1|A|A|2587
9H3Q|1|A|G|2588
*
9H3Q|1|A|C|2606
9H3Q|1|A|G|2607
9H3Q|1|A|G|2608
9H3Q|1|A|U|2609
9H3Q|1|A|C|2610
9H3Q|1|A|C|2611
9H3Q|1|A|C|2612
9H3Q|1|A|U|2613
9H3Q|1|A|A|2614
9H3Q|1|A|U|2615

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

Large ribosomal subunit protein uL15