J5_9H3S_006
3D structure
- PDB id
- 9H3S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 50S subunit precursor C-CP_YjgA_L22
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.16 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 9H3S|1|A|U|2076, 9H3S|1|A|G|2428, 9H3S|1|A|G|2429, 9H3S|1|A|A|2430, 9H3S|1|A|U|2431, 9H3S|1|A|A|2434
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9H3S_006 not in the Motif Atlas
- Homologous match to J5_7A0S_007
- Geometric discrepancy: 0.1113
- The information below is about J5_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.1
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
9H3S|1|A|U|2074
9H3S|1|A|U|2075
9H3S|1|A|U|2076
9H3S|1|A|A|2077
*
9H3S|1|A|U|2243
9H3S|1|A|U|2244
9H3S|1|A|U|2245
9H3S|1|A|G|2246
*
9H3S|1|A|C|2258
9H3S|1|A|U|2259
*
9H3S|1|A|A|2281
9H3S|1|A|G|2282
*
9H3S|1|A|C|2427
9H3S|1|A|G|2428
9H3S|1|A|G|2429
9H3S|1|A|A|2430
9H3S|1|A|U|2431
9H3S|1|A|A|2432
9H3S|1|A|A|2433
9H3S|1|A|A|2434
9H3S|1|A|A|2435
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain C
- UPF0307 protein YjgA
- Chain L
- Large ribosomal subunit protein uL15
- Chain W
- Large ribosomal subunit protein bL27
- Chain X
- Large ribosomal subunit protein bL28
Coloring options: