J5_9H3T_004

3D structure

PDB id

9H3T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C_L2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.85 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

9H3T|1|A|U|1758, 9H3T|1|A|G|1763

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9H3T_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.124

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9H3T|1|A|G|1674
9H3T|1|A|C|1675
9H3T|1|A|A|1676
9H3T|1|A|A|1677
9H3T|1|A|A|1678
9H3T|1|A|A|1679
9H3T|1|A|U|1680
9H3T|1|A|G|1681
9H3T|1|A|G|1682
*
9H3T|1|A|C|1706
9H3T|1|A|G|1707
*
9H3T|1|A|U|1751
9H3T|1|A|C|1752
*
9H3T|1|A|G|1756
9H3T|1|A|A|1757
9H3T|1|A|U|1758
9H3T|1|A|A|1759
9H3T|1|A|C|1760
9H3T|1|A|C|1761
9H3T|1|A|A|1762
9H3T|1|A|G|1763
9H3T|1|A|C|1764
*
9H3T|1|A|G|1988
9H3T|1|A|G|1989
9H3T|1|A|C|1990

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

Large ribosomal subunit protein uL14

Chain P

Large ribosomal subunit protein bL19