J5_9H3W_001

3D structure

PDB id

9H3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_H68

Experimental method

ELECTRON MICROSCOPY

Resolution

5.38 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAUCA*UGAGG

Length

26 nucleotides

Bulged bases

9H3W|1|A|U|50

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H3W|1|A|C|47
9H3W|1|A|G|48
9H3W|1|A|A|49
9H3W|1|A|U|50
9H3W|1|A|G|51
9H3W|1|A|A|52
9H3W|1|A|A|53
9H3W|1|A|G|54
*
9H3W|1|A|C|116
9H3W|1|A|G|117
9H3W|1|A|A|118
9H3W|1|A|A|119
9H3W|1|A|U|120
9H3W|1|A|G|121
*
9H3W|1|A|C|130
9H3W|1|A|A|131
*
9H3W|1|A|U|148
9H3W|1|A|A|149
9H3W|1|A|U|150
9H3W|1|A|C|151
9H3W|1|A|A|152
*
9H3W|1|A|U|174
9H3W|1|A|G|175
9H3W|1|A|A|176
9H3W|1|A|G|177
9H3W|1|A|G|178

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34

Chain X

Large ribosomal subunit protein bL28