J5_9H6I_004
3D structure
- PDB id
- 9H6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GCAAAAUGG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 9H6I|1|A|G|2115, 9H6I|1|A|G|2120
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9H6I|1|A|G|1908
9H6I|1|A|C|1909
9H6I|1|A|A|1910
9H6I|1|A|A|1911
9H6I|1|A|A|1912
9H6I|1|A|A|1913
9H6I|1|A|U|1914
9H6I|1|A|G|1915
9H6I|1|A|G|1916
*
9H6I|1|A|U|1940
9H6I|1|A|G|1941
*
9H6I|1|A|U|2108
9H6I|1|A|G|2109
*
9H6I|1|A|C|2113
9H6I|1|A|G|2114
9H6I|1|A|G|2115
9H6I|1|A|A|2116
9H6I|1|A|C|2117
9H6I|1|A|A|2118
9H6I|1|A|A|2119
9H6I|1|A|G|2120
9H6I|1|A|G|2121
*
9H6I|1|A|C|2329
9H6I|1|A|A|2330
9H6I|1|A|C|2331
Current chains
- Chain A
- Ribosomal RNA 25S
Nearby chains
- Chain AK
- Large ribosomal subunit protein eL19x
- Chain AO
- Large ribosomal subunit protein eL24z
- Chain Aa
- Small ribosomal subunit protein eS8z
- Chain BI
- Large ribosomal subunit protein uL14x/uL14z/uL14y
- Chain BS
- Large ribosomal subunit protein uL3z
- Chain h1
- Small subunit ribosomal RNA; SSU rRNA
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