J5_9H6I_005
3D structure
- PDB id
- 9H6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- AGAAGACC*(OMG)GAUAACUG*CUU(5MC)GAUGUC*GG(UR3)U(PSU)AG*(PSU)AGUUU
- Length
- 40 nucleotides
- Bulged bases
- 9H6I|1|A|A|2402, 9H6I|1|A|A|2816, 9H6I|1|A|G|2873, 9H6I|1|A|U|2977, 9H6I|1|A|U|2978
- QA status
- Modified nucleotides: OMG, 5MC, UR3, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9H6I|1|A|A|2397
9H6I|1|A|G|2398
9H6I|1|A|A|2399
9H6I|1|A|A|2400
9H6I|1|A|G|2401
9H6I|1|A|A|2402
9H6I|1|A|C|2403
9H6I|1|A|C|2404
*
9H6I|1|A|OMG|2814
9H6I|1|A|G|2815
9H6I|1|A|A|2816
9H6I|1|A|U|2817
9H6I|1|A|A|2818
9H6I|1|A|A|2819
9H6I|1|A|C|2820
9H6I|1|A|U|2821
9H6I|1|A|G|2822
*
9H6I|1|A|C|2866
9H6I|1|A|U|2867
9H6I|1|A|U|2868
9H6I|1|A|5MC|2869
9H6I|1|A|G|2870
9H6I|1|A|A|2871
9H6I|1|A|U|2872
9H6I|1|A|G|2873
9H6I|1|A|U|2874
9H6I|1|A|C|2875
*
9H6I|1|A|G|2950
9H6I|1|A|G|2951
9H6I|1|A|UR3|2952
9H6I|1|A|U|2953
9H6I|1|A|PSU|2954
9H6I|1|A|A|2955
9H6I|1|A|G|2956
*
9H6I|1|A|PSU|2974
9H6I|1|A|A|2975
9H6I|1|A|G|2976
9H6I|1|A|U|2977
9H6I|1|A|U|2978
9H6I|1|A|U|2979
Current chains
- Chain A
- Ribosomal RNA 25S
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain AR
- 60S ribosomal protein L29
- Chain BQ
- Large ribosomal subunit protein uL2z
- Chain BS
- Large ribosomal subunit protein uL3z
- Chain BT
- Large ribosomal subunit protein uL4z
- Chain Ha
- Large ribosomal subunit protein uL15x
- Chain L3
- Nascent polypeptide
Coloring options: